DOI: 10.1002/prot.340140405. Generation of a substructure library for the description and classification of protein secondary structure. II. Application to spectra–structure correlations in fourier transform infrared spectroscopy

Generation of a substructure library for the description and classification of protein secondary structure. II. Application to spectra–structure correlations in fourier transform infrared spectroscopy

10.1002/prot.340140405

Crossref journal-article

Wiley

Proteins: Structure, Function, and Bioinformatics (311)

Abstract

AbstractFourier transform infrared spectroscopy has become well known as a sensitive and informative tool for studying secondary structure in proteins. Present analysis of the conformation‐sensitive amide I region in protein infrared spectra, when combined with band narrowing techniques, provides more information concerning protein secondary structure than can be meaningfully interpreted. This is due in part to limited models for secondary structure. Using the algorithm described in the previous paper of this series, we have generated a library of substructures for several trypsin‐like serine proteases. This library was used as a basis for spectra–structure correlations with infrared spectra in the amide I′ region, for five homologous proteins for which spectra were collected. Use of the substructure library has allowed correlations not previously possible with template‐based methods of protein conformational analysis. © 1992 Wiley‐Liss, Inc.

Bibliography

Prestrelski, S. J., Byler, D. M., & Liebman, M. N. (1992). Generation of a substructure library for the description and classification of protein secondary structure. II. Application to spectraâstructure correlations in fourier transform infrared spectroscopy. Proteins: Structure, Function, and Bioinformatics, 14(4), 440â450. Portico.

Authors 3

Steven J. Prestrelski (first)
D. Michael Byler (additional)
Michael N. Liebman (additional)

References 33 Referenced 26

{'key': 'e_1_2_1_2_2', 'volume-title': 'Polyamino Acids, Polypeptides and Proteins: Proceedings of an International Symposium Held at the University of Wisconsin, 1961', 'author': 'Miyazawa T.', 'year': '1962'} / Polyamino Acids, Polypeptides and Proteins: Proceedings of an International Symposium Held at the University of Wisconsin, 1961 by Miyazawa T. (1962)
10.1002/bip.360250307
10.1016/0006-291X(83)91016-1
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10.1016/0022-2836(77)90207-8
10.1002/bip.360221211
10.1159/000469283 / Enzyme / Structural organization in the serine proteases I. Macromolecular specificity in limited proteolysis by Liebman M. N. (1986)
10.1021/bi00215a020
10.1016/0022-2836(81)90465-4
10.1366/0003702814732634
10.1016/S0022-2836(77)80200-3
10.1021/bi00429a002
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10.1016/0022-2836(78)90412-6
10.1080/00222338208056495 / J. Macromol. Sci.‐Chem. / Quantitative conformational studies on poly(vinylchloride) by Maddams W. F. (1982)
10.1016/S0021-9258(18)89259-6 / J. Biol. Chem. / The refinement and the structure of the dimer of β‐chymotrypsin at 1.67 Å resolution by Blevins R. A. (1985)
10.1016/0022-2836(85)90074-9
10.1016/0167-4838(88)90152-5
Byler D. M. Purcell J. M.Examination of slow reversible variations in protein secondary structure by FTIR spectroscopy: Spectrosc.Biol. Mol. Proc. Eur. Conf.3rd 3 21–24 1989.
10.1007/978-1-4684-5368-3_2
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10.1016/0006-291X(88)90512-8
10.1021/ja00221a050
10.1021/bi00387a021
10.1016/0003-9861(91)90335-G
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10.1016/0022-2836(88)90641-9
10.1002/prot.340030202
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10.1107/S010876818300275X

Dates

Type	When
Created	20 years, 3 months ago (May 28, 2005, 9:22 p.m.)
Deposited	1 year, 10 months ago (Oct. 23, 2023, 10:26 a.m.)
Indexed	1 month ago (Aug. 2, 2025, 1:18 a.m.)
Issued	32 years, 9 months ago (Dec. 1, 1992)
Published	32 years, 9 months ago (Dec. 1, 1992)
Published Online	21 years, 7 months ago (Feb. 3, 2004)
Published Print	32 years, 9 months ago (Dec. 1, 1992)

Funders 0

None

BibTeX

@article{Prestrelski_1992, title={Generation of a substructure library for the description and classification of protein secondary structure. II. Application to spectra–structure correlations in fourier transform infrared spectroscopy}, volume={14}, ISSN={1097-0134}, url={http://dx.doi.org/10.1002/prot.340140405}, DOI={10.1002/prot.340140405}, number={4}, journal={Proteins: Structure, Function, and Bioinformatics}, publisher={Wiley}, author={Prestrelski, Steven J. and Byler, D. Michael and Liebman, Michael N.}, year={1992}, month=dec, pages={440–450} }

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