DOI: 10.1002/prot.340050307. PKB: A program system and data base for analysis of protein structure

PKB: A program system and data base for analysis of protein structure

10.1002/prot.340050307

Crossref journal-article

Wiley

Proteins: Structure, Function, and Bioinformatics (311)

Abstract

AbstractPKB is a computer program system that combines a data base of three‐dimensional protein structures with a series of algorithms for pattern recognition, data analysis, and graphics. By typing relatively simple commands the user may search the data base for instances of a structural motif and analyze in detail the set of individual structures that are found. The application of PKB to the study of protein folding is illustrated in three examples. The first analysis compares the conformations observed for a short sequential motif, sequences similar to the cell‐attachment signal Arg‐Gly‐Asp. The second compares sequences observed for a conformational motif, a 16‐residue βαβ unit. The third analysis considers a population of substructures containing ion‐pair interaction, examining the relationship offrequency of occurrence to calculated electrostatic energy.

Bibliography

Bryant, S. H. (1989). PKB: A program system and data base for analysis of protein structure. Proteins: Structure, Function, and Bioinformatics, 5(3), 233â247. Portico.

Authors 1

Stephen H. Bryant (first)

References 41 Referenced 19

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Dates

Type	When
Created	20 years, 3 months ago (May 28, 2005, 9:02 p.m.)
Deposited	1 year, 10 months ago (Oct. 21, 2023, 10:39 p.m.)
Indexed	1 year, 10 months ago (Oct. 26, 2023, 5:23 p.m.)
Issued	36 years, 8 months ago (Jan. 1, 1989)
Published	36 years, 8 months ago (Jan. 1, 1989)
Published Online	21 years, 7 months ago (Feb. 3, 2004)
Published Print	36 years, 8 months ago (Jan. 1, 1989)

Funders 0

None

BibTeX

@article{Bryant_1989, title={PKB: A program system and data base for analysis of protein structure}, volume={5}, ISSN={1097-0134}, url={http://dx.doi.org/10.1002/prot.340050307}, DOI={10.1002/prot.340050307}, number={3}, journal={Proteins: Structure, Function, and Bioinformatics}, publisher={Wiley}, author={Bryant, Stephen H.}, year={1989}, month=jan, pages={233–247} }

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