Crossref journal-article
Wiley
Molecular Informatics (311)
Abstract

AbstractHere, chemoinformatics is considered as a theoretical chemistry discipline complementary to quantum chemistry and force‐field molecular modeling. These three fields are compared with respect to molecular representation, inference mechanisms, basic concepts and application areas. A chemical space, a fundamental concept of chemoinformatics, is considered with respect to complex relations between chemical objects (graphs or descriptor vectors). Statistical Learning Theory, one of the main mathematical approaches in structure‐property modeling, is briefly reviewed. Links between chemoinformatics and its “sister” fields – machine learning, chemometrics and bioinformatics are discussed.

Bibliography

Varnek, A., & Baskin, I. I. (2011). Chemoinformatics as a Theoretical Chemistry Discipline. Molecular Informatics, 30(1), 20–32. Portico.

Authors 2
  1. Alexandre Varnek (first)
  2. Igor I. Baskin (additional)
References 121 Referenced 96
  1. 10.1007/s00216-005-0065-y
  2. 10.1002/3527601643
  3. 10.1002/9783527618279 / Handbook of Chemoinformatics: From Data to Knowledge, by Gasteiger J. (2003)
  4. 10.1023/A:1021321621406
  5. {'key': 'e_1_2_7_5_2', 'author': 'Brown N.', 'year': '2006', 'journal-title': 'Computing Surveys'} / Computing Surveys by Brown N. (2006)
  6. 10.1021/ci060016u
  7. 10.1021/ci600234z
  8. J.‐L. Faulon A. Bender 2010
  9. {'key': 'e_1_2_7_9_2', 'first-page': '1', 'volume': '41', 'author': 'Nathan B.', 'year': '2009', 'journal-title': 'ACM Comput. Surv.'} / ACM Comput. Surv. by Nathan B. (2009)
  10. 10.1039/9781847558879-00001
  11. {'key': 'e_1_2_7_11_2', 'volume-title': 'Molecular Modelling Principles and Applications', 'author': 'Leach A. R.', 'year': '2001'} / Molecular Modelling Principles and Applications by Leach A. R. (2001)
  12. 10.1145/1459352.1459353
  13. 10.1017/CBO9780511790423
  14. {'key': 'e_1_2_7_14_2', 'volume-title': 'Statistical Learning Theory', 'author': 'Vapnik V.', 'year': '1998'} / Statistical Learning Theory by Vapnik V. (1998)
  15. 10.1145/1968.1972
  16. {'key': 'e_1_2_7_16_2', 'first-page': '55', 'volume-title': 'ACS Fall 2009 National Meeting & Exposition', 'author': 'Nicholls A.', 'year': '2009'} / ACS Fall 2009 National Meeting & Exposition by Nicholls A. (2009)
  17. 10.1002/9780470125854.ch3
  18. 10.1002/9780470125854.ch2
  19. 10.1021/jm900107b
  20. 10.1007/s00214-007-0310-x
  21. 10.1002/jcc.20495
  22. 10.1038/nature03192
  23. 10.1021/cc0000388
  24. 10.1007/s10822-005-9008-0
  25. {'key': 'e_1_2_7_25_2', 'volume-title': 'Pharmacophores and Pharmacophore Searches', 'author': 'Langer T.', 'year': '2000'} / Pharmacophores and Pharmacophore Searches by Langer T. (2000)
  26. 10.1021/ci00001a010
  27. 10.1108/eb024334
  28. {'key': 'e_1_2_7_28_2', 'volume-title': 'Hypergraphs', 'author': 'Berge C.', 'year': '1989'} / Hypergraphs by Berge C. (1989)
  29. 10.1002/9783527613106
  30. 10.1021/ci8002914
  31. 10.1023/A:1015505612789
  32. 10.1002/0471720895.ch4
  33. {'key': 'e_1_2_7_33_2', 'first-page': '613', 'volume': '307', 'author': 'Baskin I. I.', 'year': '1989', 'journal-title': 'Dokl. Akad. Nauk. SSSR'} / Dokl. Akad. Nauk. SSSR by Baskin I. I. (1989)
  34. {'key': 'e_1_2_7_34_2', 'first-page': '486', 'volume-title': 'AIP Conf. Proc. 330. E.C.C.C.1 Comput. Chem. F.E.C.S. Conf., Nancy, France', 'author': 'Skvortsova M. I.', 'year': '1995'} / AIP Conf. Proc. 330. E.C.C.C.1 Comput. Chem. F.E.C.S. Conf., Nancy, France by Skvortsova M. I. (1995)
  35. 10.1016/0898-5529(90)90066-H
  36. 10.1021/ci00014a017
  37. 10.1021/ci020346o
  38. 10.1007/s10822-005-9007-1
  39. A. M. Johnson G. M. Maggiora Concepts and Applications of Molecular Similarity Wiley New York 1990.
  40. 10.1002/qsar.200330831
  41. 10.1023/A:1021271615909
  42. 10.1021/ci00009a019
  43. 10.1021/ci050035o
  44. {'key': 'e_1_2_7_44_2', 'volume-title': 'Learning with Kernels: Support Vector Machines, Regularization, Optimization, and Beyond', 'author': 'Schölkopf B.', 'year': '2002'} / Learning with Kernels: Support Vector Machines, Regularization, Optimization, and Beyond by Schölkopf B. (2002)
  45. G. Paris (August 1999 Meeting of the American Chemical Society) quoted by W. Warr at http://www.warr.com/warrzone.htm.
  46. 10.1002/minf.200900080
  47. 10.1021/ci9800211
  48. 10.1021/ar010048x
  49. 10.1002/qsar.19970160105
  50. 10.1016/j.ijpharm.2003.08.013
  51. 10.1080/10629369908033223
  52. 10.1016/0898-5529(90)90162-2
  53. 10.1007/978-3-642-56927-2
  54. 10.1021/ci0303013
  55. 10.1021/ci700040r
  56. 10.1021/ci010379o
  57. 10.1007/s10910-010-9668-4
  58. 10.1021/jm9602928
  59. 10.1021/jm9903996
  60. 10.1021/ci600338x
  61. 10.1073/pnas.0503647102
  62. 10.1038/nchembio.188
  63. 10.1038/nchembio.187
  64. 10.1021/jm0705713
  65. 10.1021/jm070845m
  66. 10.1021/ci7003412
  67. 10.1021/ci700342h
  68. 10.1039/9781847558879-00150
  69. 10.1002/qsar.19900090304
  70. {'key': 'e_1_2_7_70_2', 'volume-title': 'QSAR: Rational Approaches to the Design of Bioactive Compounds', 'author': 'Magee P. S.', 'year': '1991'} / QSAR: Rational Approaches to the Design of Bioactive Compounds by Magee P. S. (1991)
  71. 10.1021/jm00107a010
  72. 10.1021/ci050077c
  73. 10.1021/ci010124a
  74. 10.1080/10629360108035372
  75. 10.1021/ci980114i
  76. 10.1002/cmdc.200700021
  77. 10.1002/anie.200600881
  78. 10.1002/9783527618279.ch39c
  79. {'key': 'e_1_2_7_79_2', 'volume-title': 'Principal Component Analysis', 'author': 'Jolliffe I. T.', 'year': '2002'} / Principal Component Analysis by Jolliffe I. T. (2002)
  80. 10.1021/np049655u
  81. 10.1021/np070002y
  82. {'key': 'e_1_2_7_82_2', 'volume': '88', 'author': 'Hyvarinen A.', 'year': '1997', 'journal-title': 'Acta Polytech. Sc. Ma.'} / Acta Polytech. Sc. Ma. by Hyvarinen A. (1997)
  83. 10.1162/neco.1997.9.7.1483
  84. 10.1016/S0893-6080(00)00026-5
  85. 10.1021/ci0004053
  86. 10.1021/ci050146n
  87. 10.1021/ci0256182
  88. 10.1021/ci050041k
  89. 10.1021/ci9701190
  90. 10.1186/1752-153X-3-S1-O9
  91. 10.1021/ci8000259
  92. 10.1021/jm800867g
  93. 10.1002/cmdc.200900300
  94. 10.1021/ci600427x
  95. 10.1021/ci7004093
  96. 10.1021/ci060117s
  97. D. Bonchev D. H. Rouvray 1991 Gordon and Breach New York 300
  98. 10.1021/ja01062a035
  99. 10.1002/9780470140529
  100. {'key': 'e_1_2_7_100_2', 'volume-title': 'Neural Networks in Chemistry', 'author': 'Zupan J.', 'year': '1999'} / Neural Networks in Chemistry by Zupan J. (1999)
  101. {'key': 'e_1_2_7_101_2', 'first-page': '137', 'volume': '458', 'author': 'Baskin I. I.', 'year': '2008', 'journal-title': 'Methods Mol. Biol.'} / Methods Mol. Biol. by Baskin I. I. (2008)
  102. {'key': 'e_1_2_7_102_2', 'volume-title': 'Classification and Regression Trees', 'author': 'Breiman L.', 'year': '1984'} / Classification and Regression Trees by Breiman L. (1984)
  103. 10.1214/aos/1176346150
  104. 10.1007/978-0-387-45528-0
  105. 10.1021/jm980697n
  106. 10.1021/ci7000633
  107. 10.1021/ci100090p
  108. 10.1023/A:1010933404324
  109. 10.1021/ci9003865
  110. 10.1145/1592761.1592783
  111. 10.1002/minf.201000063
  112. 10.1186/1758-2946-2-2
  113. 10.1134/S0012500809070076
  114. {'key': 'e_1_2_7_114_2', 'volume-title': 'Handbook of Chemometrics and Qualimetrics', 'author': 'Massart D. L.', 'year': '1998'} / Handbook of Chemometrics and Qualimetrics by Massart D. L. (1998)
  115. 10.1021/ci050065r
  116. 10.1021/ci600342e
  117. 10.1039/9781847558879-00076
  118. 10.1021/ci050367t
  119. 10.1093/bioinformatics/btm580
  120. 10.1093/bioinformatics/btn409
  121. 10.1021/ci900004a
Dates
Type When
Created 14 years, 7 months ago (Jan. 24, 2011, 11:59 a.m.)
Deposited 1 year, 10 months ago (Oct. 9, 2023, 11:54 p.m.)
Indexed 1 month ago (July 25, 2025, 6:13 a.m.)
Issued 14 years, 7 months ago (Jan. 17, 2011)
Published 14 years, 7 months ago (Jan. 17, 2011)
Published Online 14 years, 7 months ago (Jan. 24, 2011)
Published Print 14 years, 7 months ago (Jan. 17, 2011)
Funders 4
  1. L. Morin-Allory
  2. P. Vayer
  3. G. Marcou
  4. J. Harrowfield

@article{Varnek_2011, title={Chemoinformatics as a Theoretical Chemistry Discipline}, volume={30}, ISSN={1868-1751}, url={http://dx.doi.org/10.1002/minf.201000100}, DOI={10.1002/minf.201000100}, number={1}, journal={Molecular Informatics}, publisher={Wiley}, author={Varnek, Alexandre and Baskin, Igor I.}, year={2011}, month=jan, pages={20–32} }