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BioEssays (311)
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de la Cruz, X., Lois, S., Sánchez-Molina, S., & Martínez-Balbás, M. A. (2005). Do protein motifs read the histone code? BioEssays, 27(2), 164–175. Portico.

Authors 4
  1. Xavier de la Cruz (first)
  2. Sergio Lois (additional)
  3. Sara Sánchez-Molina (additional)
  4. Marian A. Martínez-Balbás (additional)
References 91 Referenced 207
  1. 10.1016/S0959-437X(99)80022-7 / Curr Opin Genet Dev / Chromatin-modifying and remodelling complexes by Konberg (1999)
  2. 10.1002/j.1460-2075.1988.tb02956.x / EMBO J / A direct link between core histone acetylation and transcriptionally active chromatin by Hebbes (1988)
  3. 10.1038/35020506 / Nature / Regulation of chromatin structure by site-specific histone H3 methyltransferases by Rea (2000)
  4. 10.1016/S0968-0004(00)01718-7 / Trends Biochem Sci / 25 years after the nucleosome model: Chromatin modifications by Wu (2000)
  5. 10.1016/S0959-437X(02)00279-4 / Curr Opin Genet Dev / Histone modifications in transcriptional regulation by Berger (2002)
  6. 10.1101/gad.13.18.2339 / Genes Dev / ATP-dependent remodelling and acetylation as regulators of chromatin fluidity by Kingston (1999)
  7. 10.1016/0092-8674(92)90417-B / Cell / Histone H4 isoforms acetylated at specific lysine residues define individual chromosomes and chromatin domains in Drosophila polytene nuclei by Turner (1992)
  8. 10.1016/S0092-8674(05)80078-9 / Cell / Decoding the nucleosome by Turner (1993)
  9. 10.1038/47412 / Nature / The language of covalent histone modifications by Strahl (2000)
  10. 10.1126/science.1063127 / Science / Translating the histone code by Jenuwein (2001)
  11. 10.1172/JCI0216547 / J Clin Invest / An increasingly complex code by Spotswood (2002)
  12. 10.1016/S0092-8674(02)01080-2 / Cell / Cellular memory and the histone code by Turner (2002)
  13. 10.1038/35073047 / Nature Rev / Protein modules that manipulate histone tails for chromatin regulation by Marmorstein (2001)
  14. 10.1038/35065138 / Nature / Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain by Bannister (2001)
  15. 10.1038/35065132 / Nature / Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins by Lachner (2001)
  16. 10.1038/nature01126 / Nature / Histone methylation by Drosophila epigenetic regulator Ash1 by Beisel (2002)
  17. 10.1074/jbc.C200045200 / J Biol Chem / Histone H3 lysine 4 methylation disrupts binding of nucleosome remodelling and deacetylase (NuRD) repressor complex by Zegerman (2002)
  18. 10.1038/nature00883 / Nature / Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast by Sun (2002)
  19. 10.1038/nature02017 / Nature / Binary switches and modification cassettes in histone biology and beyond by Fischle (2003)
  20. 10.1016/S0092-8674(02)01077-2 / Cell / Deciphering the transcriptional histone acetylation code for a human gene by Agalioti (2002)
  21. 10.1016/S0092-8674(02)00975-3 / Cell / Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites by Czermin (2002)
  22. 10.1016/S0092-8674(02)00976-5 / Cell / Histone methyltransferase activity of a Drosophila polycomb group represor complex by Müller (2002)
  23. {'key': '10.1002/bies.20176-BIB23|cit23', 'first-page': '151', 'article-title': 'The bromodomain revisited', 'volume': '22', 'author': 'Jeanmougin', 'year': '1997', 'journal-title': 'TIBS'} / TIBS / The bromodomain revisited by Jeanmougin (1997)
  24. 10.1016/0092-8674(92)90191-E / Cell / brahma: a regulator of Drosophila homeotic genes structurally related to the yeast transcriptional activator SNF2/SWI2 by Tankum (1992)
  25. 10.2741/Horn / Front Biosci / The bromodomain: a regulator of ATP-dependent chromatin remodelling? by Horn (2001)
  26. 10.1016/S0014-5793(01)03309-9 / FEBS Lett / Bromodomain: an acetyl-lysine binding domain by Zheng (2002)
  27. 10.1038/20974 / Nature / Structure and ligand of a histone acetyltransferase bromodomain by Dhalluin (1999)
  28. 10.1038/sj.embor.7400146 / EMBO Rep / Structures of proteins that create or recognize histone modifications by Bottomley (2004)
  29. 10.1006/jmbi.2000.4207 / J Mol Biol / Solution structure and acetyl-lysine binding activity of the GCN5 bromodomain by Hudson (2000)
  30. 10.1093/emboj/19.22.6141 / EMBO J / The structural basis for the recognition of acetylated histone H4 by the bromodomain of histone acetyltransferase Gcn5p by Owen (2000)
  31. 10.1126/science.288.5470.1422 / Science / Structure and function of a human TAFII250 double bromodomain module by Jacobson (2000)
  32. 10.1038/10640 / Nat Struct Biol / The bromodomain: a chromatin-targeting module? by Winston (1999)
  33. 10.1016/S0092-8674(02)01005-X / Cell / Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes by Hassan (2002)
  34. 10.1038/35006136 / Nature / The Gcn5 bromodomain co-ordinates nucleosome remodelling by Syntichaki (2000)
  35. 10.1038/sj.onc.1201873 / Oncogene / Isolation and characterisation of a Pufferfish MLL (mixed lineage leukaemia)-like gene (fMll) reveals evolutionary conservation in vertebrate genes related Drosophila tritorax by Caldas (1998)
  36. 10.1038/sj.emboj.7600143 / EMBO J / Tandem bromodomains in the chromatin remodeler RSC recognize acetylated histone H3 Lys14 by Kasten (2004)
  37. 10.1073/pnas.88.1.263 / Proc Natl Acad Sci USA / Polycomb protein shares a homologous domain with a heterochromatin-associated protein of Drosophila by Paro (1991)
  38. 10.1002/(SICI)1521-1878(200002)22:2<124::AID-BIES4>3.0.CO;2-E / Bioessays / Mammalian chromodomain proteins: Their role in genome organisation and expression by Jones (2000)
  39. 10.1016/S0378-1119(01)00628-X / Gene / Molecular biology of the chromodomain: an ancient chromatin module comes of age by Eissenberg (2001)
  40. 10.1093/emboj/16.9.2473 / EMBO J / Structure of the chromatin binding (chromo) domain from mouse modifier protein 1 by Ball (1997)
  41. 10.1038/nature722 / Nature / Structure of the HP1 chromodomain bound to histone H3 methylated at lysine 9 by Nielsen (2002)
  42. 10.1126/science.1069473 / Science / Structure of HP1 chromodomain bound to a lysine 9-methylated histone H3 tail by Jacobs (2002)
  43. 10.1002/bies.950140907 / Bioessays / Position effect variegation and chromatin proteins by Reuter (1992)
  44. 10.1016/S0167-4838(96)00165-3 / Biochim Biophys Acta / Self-association of chromo domain peptides by Cowell (1997)
  45. 10.1126/science.1060118 / Science / Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly by Nakayama (2001)
  46. 10.1093/emboj/20.18.5232 / EMBO J / Specificity of the HP1 chromo domain for the methylated N-terminus of histone H3 by Jacobs (2001)
  47. 10.1093/emboj/21.10.2430 / EMBO J / The dMi-2 chromodomains are DNA binding modules important for ATP-dependent nucleosome binding and mobilization properties by Bouazone (2002)
  48. 10.1038/35030169 / Nature / Chromodomains are protein-RNA interaction modules by Akhtar (2000)
  49. 10.1002/(SICI)1520-6408(1998)22:1<56::AID-DVG6>3.0.CO;2-6 / Dev Genet / Targeting of MOF, a putative histone acetyl transferase, to the X chromosome of Drosophila melanogaster by Gu (1998)
  50. 10.1016/S0092-8674(00)81979-0 / Cell / Epigenetic spreading of the Drosophila dosage compensation complex from roX RNA genes into flanking chromatin by Kelley (1999)
  51. 10.1016/S0960-9822(00)00311-0 / Curr Biol / Ordered assembly of the roX RNAs into MSL complexes on the dosage-compensated X chromosome in Drosophila by Meller (2000)
  52. 10.1038/ng843 / Nat Genet / Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component by Maison (2002)
  53. 10.1016/S1097-2765(01)00218-0 / Mol Cell / Heterochromatin formation in mammalian cells: interaction between histones and HP1 proteins by Nielsen (2001)
  54. 10.1128/MCB.19.2.1479 / Mol Cell Biol / Identification of a gene that reverses the immortal phenotype of a subset of cells and is a member of a novel family of transcription factors-like genes by Bertram (1999)
  55. 10.1016/S0378-1119(01)00372-9 / Gene / Conservation of the MORF4 related gene family: identification of a new chromo domain subfamily and a novel protein motif by Bertam (2001)
  56. 10.1128/MCB.20.1.312-318.2000 / Mol Cell Biol / The drosophilae MSL complex acetylates histone H4 at lysine 16, a chromatin modification linked to dosage compensation by Smith (2000)
  57. 10.1074/jbc.M008159200 / J Biol Chem / The yeast NuA4 and Drosophila MSL complexes contain homologous subunits important for transcriptional regulation by Eisen (2001)
  58. 10.1093/emboj/18.18.5108 / EMBO J / NuA4, an essential transcription adaptor/histone H4 acetyltransferase complex containing Esa1p and the ATM-related cofactor Tra1p by Allard (1999)
  59. 10.1146/annurev.biochem.70.1.81 / Annu Rev Biochem / Histone acetyltransferases by Roth (2001)
  60. 10.1073/pnas.082248899 / Proc Natl Acad Sci USA / Previously uncharacterized histone acetyltransferases implicated in mammalian spermatogenesis by Lahn (2002)
  61. 10.1007/s00439-003-0990-9 / Hum Genet / Members of the CDY family have different expression patterns: CDY1 transcripts have the best correlation with complete spermatogenesis by Kleiman (2003)
  62. 10.1038/566 / Nat Genet / The chromo and SET domains of the Clr4 protein are essential for silencing in fission yeast by Ivanova (1998)
  63. 10.1073/pnas.96.24.13839 / Proc Natl Acad Sci USA / PICKLE is a CHD3 chromatin-remodeling factor that regulates the transition from embryonic to vegetative development in Arabidopsis by Ogas (1999)
  64. 10.1126/science.282.5395.1897 / Science / dMi-2, a hunchback-interacting protein that functions in Polycomb repression by Kehle (1998)
  65. 10.1242/dev.127.24.5277 / Development / The C. elegant Mi-2 chromatin-remodelling proteins function in vulval cell fate determination by Zelewsky (2000)
  66. 10.1002/art.1780381006 / Arthritis Rheum / The major dermatomyositis specific Mi-2 autoantigen is a presumed helicase involved in transcriptional activation by Seelig (1995)
  67. 10.1016/S0168-9525(00)02066-7 / Trends Genet / NuRD and SIN3 histone deacetylase complexes in development by Ahringer (2000)
  68. 10.1073/pnas.94.21.11472 / Proc Natl Acad Sci USA / Characterization of the CHD family of proteins by Woodage (1997)
  69. 10.1007/s00335-001-3042-6 / Mamm Genome / CHD5 defines a new subfamily of chromodomain-SWI2/SNF2-like helicases by Schuster (2002)
  70. {'key': '10.1002/bies.20176-BIB70|cit70', 'first-page': '87', 'article-title': 'The SANT domain: a putative DNA-binding domain in the SWI_SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIB', 'volume': '21', 'author': 'Aasland', 'year': '1996', 'journal-title': 'Trends Biochem Sci'} / Trends Biochem Sci / The SANT domain: a putative DNA-binding domain in the SWI_SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIB by Aasland (1996)
  71. 10.1016/S1097-2765(03)00273-9 / Mol Cell / Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI by Grüne (2003)
  72. 10.1016/0092-8674(94)90549-5 / Cell / Crystal structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices by Ogata (1994)
  73. 10.1016/S1097-2765(02)00634-2 / Mol Cell / Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes by Boyer (2002)
  74. 10.1038/nrm1314 / Nat Rev Mol Cell Biol / The SANT domain: a unique histone-tail-binding module? by Boyer (2004)
  75. 10.1093/emboj/cdg326 / EMBO J / A SANT motif in the SMRT corepressor interprets the histone code and promotes histone deacetylation by Yu (2003)
  76. 10.1073/pnas.98.4.1454 / Proc Natl Acad Sci USA / CoRest is an integral component of the CoREST human histone deacetylase complex by You (2001)
  77. 10.1074/jbc.M104935200 / J Biol Chem / Human HDAC7 histone deacetylase activity is associated with HDAC3 in vivo by Fischle (2001)
  78. 10.1074/jbc.M108601200 / J Biol Chem / The SANT domain of Ada2 is required for normal acetylation of histones by the yeast SAGA complex by Sterner (2002)
  79. 10.1016/S1097-2765(02)00741-4 / Mol Cell / MLL targets SET domain methyltransferase activity to Hox gene promoters by Milne (2002)
  80. 10.1002/j.1460-2075.1995.tb00069.x / EMBO J / Functional analysis of the chromo domain of HP1 by Platero (1995)
  81. 10.1128/MCB.20.18.6970-6983.2000 / Mol Cell Biol / Conservation of heterochromatin protein 1 function by Wang (2000)
  82. 10.1016/S1097-2765(03)00482-9 / Mol Cell / Selective recognition of acetylated histones by bromodomain proteins visualized in living cells by Kanno (2004)
  83. 10.1016/S0092-8674(00)80740-0 / Cell / Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter by Cosma (1999)
  84. 10.1006/jmbi.1999.2577 / J Mol Biol / Bromodomain of Gcn5p interacts in vitro with specific residues in the N terminus of histone H4 by Ornaghi (1999)
  85. 10.1126/science.1074973 / Science / Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi by Volpe (2002)
  86. 10.1016/S0092-8674(02)00644-X / Cell / Epigenetic codes for heterochromatin formation and silencing: rounding up the usual suspects by Richards (2002)
  87. 10.1107/S0021889891004399 / J Appl Cryst / MOLSCRIPT: A Program to Produce Both Detailed and Schematic Plots of Protein Structures by Kraulis (1991)
  88. 10.1002/j.1538-7305.1948.tb01338.x / Bell System Tech J / A mathematical theory of communication by Shannon (1948)
  89. 10.1002/prot.10146 / Proteins / Scoring residue conservation by Valdar (2002)
  90. 10.1093/nar/gkh121 / Nucleic Acids Res Database Issue / The Pfam Protein Families Database by Bateman (2004)
  91. 10.1093/nar/30.1.242 / Nucleic Acids Res / Recent improvements to the SMART domain-based sequence annotation resource by Letunic (2002)
Dates
Type When
Created 20 years, 7 months ago (Jan. 21, 2005, 2:47 p.m.)
Deposited 4 years, 1 month ago (July 4, 2021, 3:37 a.m.)
Indexed 3 weeks, 6 days ago (July 30, 2025, 9:59 a.m.)
Issued 20 years, 7 months ago (Jan. 21, 2005)
Published 20 years, 7 months ago (Jan. 21, 2005)
Published Online 20 years, 7 months ago (Jan. 21, 2005)
Published Print 20 years, 6 months ago (Feb. 1, 2005)
Funders 0

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@article{de_la_Cruz_2005, title={Do protein motifs read the histone code?: Review articles}, volume={27}, ISSN={0265-9247}, url={http://dx.doi.org/10.1002/bies.20176}, DOI={10.1002/bies.20176}, number={2}, journal={BioEssays}, publisher={Wiley}, author={de la Cruz, Xavier and Lois, Sergio and Sánchez-Molina, Sara and Martínez-Balbás, Marian A.}, year={2005}, month=jan, pages={164–175} }